Anatomical Markup Language (AnatML) is an XML-based language for describing anatomy, in particular for modeling the human musculoskeletal system, and facilitating data exchange among contributing sc... [Jan. 9, 2002]

Apple/Genentech Basic Local Alignment Search Tool (BLAST) is an open source, enhanced implementation of the standalone version of National Center for Biotechnology Information (NCBI) Basic Local Ali... [Feb. 25, 2002]

Bioinformatic Sequence Markup Language (BSML)is a public domain XML application for bioinformatic data originally developed by Visual Genomics, now merged with LabBook, under a grant from the Nation... [Jan. 28, 2002]

The license-free Biomolecular Interaction Network Database (BIND) database stores descriptions of molecular complexes and pathways and biomolecular interactions. At the BIND site, users can downlo... [Jan. 9, 2002]

This site was created to be a center for development for open source biological DTDs. There is a BioXML Wiki page of documentation including an explanation of the BioXML Architecture and a BioXML Tut... [Jun. 4, 2001]

This is a download link for Document Type Definitions (DTDs), documentation and examples for Cave Survey Markup Language (CSML), also known as Cave Survey & Cave Map Markup Language. CSML was cre... [Jan. 2, 2001]

CaveScript, also known as CaveScript XML, is an open source suite of tools to assist speleologists with cave surveying and drawing cave maps. The components include: Cave Survey Markup Language (C... [Dec. 12, 2000]

Cuneiform Digital Library Initiative (CDLI) Assyriologists are making XML and Scalable Vector Graphics (SVG) -based representations of 3rd millennium B.C. cuneiform texts available on the Web for s... [Nov. 25, 2001]

Genome Annotation Markup Elements (GAME) is a syntax for the exchange of genomic annotation. It will enable genome centres, m... [Jul. 25, 2000]

gb2xml is a utility for converting between XML and Genetic Sequence Data Bank (GenBank) format. The Genbank to XML conversion tool is an form-based online format conversion helper based upon gb2xml.... [Jan. 10, 2002]

Part of the new science of Bioinformatics (somewhere between Biology and Computer Science), Genome Annotation Markup Elements (GAME) is a syntax for the exchange of genomic annotation. It will enabl... [Jul. 25, 2000]

Graph Exchange Language (GXL) is an XML language designed to be a standard exchange format for graphs, and to support interoperability between graph-based tools. In particular, the language wishes ... [Sep. 11, 2000]

Integrated Taxonomic Information System (ITIS) is being constructed by a partnership teaming taxonomic specialists and organizations with governmental agencies of the United States, Canada and Mexic... [Jan. 27, 2002]

Integrated Taxonomic Information System (ITIS) is being constructed by a partnership teaming taxonomic specialists and organizations with governmental agencies of the United States, Canada and Mexic... [Feb. 7, 2002]

Java Universal Markup Browser for Objects (Jumbo) is a Java-based molecular browser for Chemical Markup Language (CML) and XML documents. The Jumbo toolkit includes an independent CML editor, documen... [Feb. 7, 2002]

MacVector is a sequence analysis program that runs natively on Mac OS X and also supports the Classic environment (Mac OS 8.6 or later). MacVector can be used for sequence editing and visualizatio... [Jan. 28, 2002]

MathML is an XML application for describing mathematical notation and capturing both its structure and content. The goal of MathML is to enable mathematics to be served, received, and processed on the... [Feb. 21, 2001]

This Document Type Definition (DTD) describes Microarray Markup Language (MAML), which is part of an effort to deal with the explosive growth in the amount of data produced by gene expression analys... [Dec. 18, 2000]

Molecular Dynamics Markup Language is used to help make sense of the huge amounts of data typical of chemical simulations. The language tags constructs such as atom, bond and molecule to mark up... [Jun. 12, 2000]

Neuron Markup Language (NeuroML) is an XML application for describing models of neurons and networks of neurons. This site provides links to the Java-based NeuroML Development Kit, documentation, the... [Jan. 24, 2002]

Petri Net Markup Language (PNML) is an XML-based interchange format for Petri Nets (a formal graphical notation for modeling complex systems). PNML distinguishes between the general features shared ... [Sep. 26, 2000]

Different approaches exist for modeling human tissues, mostly discrete and continuous physical models, e.g. respectively Mass-Spring Networks and Finite Element Method. Whatever approach is chosen, th...

The Protein Information Resource-International Protein Sequence Database (PIR-PSD) is a cross-referenced, annotated protein sequence databank developed by the nonprofit organization PIR-Internationa... [Jan. 23, 2002]

Ribonucleic Acid Markup Language (RiboML) is an XML application for ribosomal science. The RiboML page provides a link to the RiboML Document Type Definition (DTD) and a sample RiboML document that ... [Jan. 14, 2002]

Systems Biology Markup Language (SBML) is an XML-based language for describing simulations in systems biology. The language is oriented towards representing biochemical networks common in research on... [Apr. 30, 2001]

Taxonomic Markup Language (TML) is an XML-based application for the classification of organisms in an ordered system, or taxonomy. The TML Document Type Definition (DTD) describes the structure of an... [Jan. 10, 2002]

The Gene Expression Markup Language (GEML) is a file format for storing DNA microarray and gene expression data. GEML is an open-standard XML format which enables exchange of data between gene expre... [Apr. 12, 2000]

Turing Machine Markup Language (TMML) is an XML application for the description of Turing machines. TMML is named for Alan Turing's hypothetical Universal Turing Machine, which demonstrated the ess... [Mar. 26, 2001]

Extensible Multi-Dimensional Simulator (xmds) is a software package used in solving field integration problems in applications such as lattice simulations for study of the atom-molecular interaction ... [Feb. 7, 2002]

The XEMBL Web service, which makes European Molecular Biology Laboratory (EMBL) Nucleotide Sequence data from the EMBL/GenBank/DNA Data Bank of Japan (DDBJ) database available, is running on salce... [Oct. 31, 2001]

Extensible Graph Markup and Modeling Language (XGMML) is an XML application based upon Graph Modeling Language (GML) that uses XML to describe graphs rather than GML's text format. A graph is define... [Oct. 2, 2000]

XML-Based Ontology Exchange Language (XOL) is a language for exchange of ontologies, created to facilitate the creation of shared ontologies (originally developed for use in bioinformatics). The ... [Dec. 22, 2000]

The Extensible Scientific Interchange Language (XSIL) is a flexible, hierarchical, extensible, transport language for scientific data objects. This page posts links to the DTD, sample files and t... [Jun. 11, 2000]

The XML System for Textual and Archaeological Research (XSTAR) Project was formed to develop a Java-based XSTAR XML database structure incorporating David Schloen's Archaeological Markup Languag... [Dec. 7, 2001]