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There is a good example of this in XML::Atom, Ben Trott's Perl implementation of the Atom API. It includes a skeleton server that handles the API (including authentication), with hooks to build the rest of your application on top. It can run as a CGI in a non-.htaccess environment. Check it out.
http://search.cpan.org/~btrott/XML-Atom-0.05/
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